#!/bin/bash

#
# Copyright (c) Vladimir Likic 2005-2011
#

source RUN_PARAMETERS

RM_FILES=`ls $SEQ_DIR/*.dnd`
for rm_file in $RM_FILES; do
  rm $rm_file
done

RM_FILES=`ls $MSF_DIR`
for rm_file in $RM_FILES; do
  rm msf/$rm_file
done

RM_FILES=`ls $HMM_MODELS`
for rm_file in $RM_FILES; do
  rm models/$rm_file
done

RM_FILES=`ls $HMM_LIB`
for rm_file in $RM_FILES; do
  rm lib/$rm_file
done

RM_FILES=`ls $OUTPUT_DIR`
for rm_file in $RM_FILES; do
  rm output/$rm_file
done

if [ -e t_coffee.log ]; then
  echo -ne "[ Removing t_coffee.log ]\n"
   rm t_coffee.log
fi

echo -ne "\n All done\n\n"

